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Hi!
I am running into the same issue as #274. I am runnning philosopher with Comet, PeptideProphet, ProteinProphet, which all proceed without issue. When it gets up to FDR filtering, I get the error…
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The Vanderbilt entity isn't being indexed correctly:
5ce2a8be2c804a4d7a73dc3b01911aad
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The IMS yaml still has the maldi-ims doc url. Perhaps we should remove this pointer until the description on the portal is updated?
doc_url: https://portal.hubmapconsortium.org/docs/assays/maldi-im…
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Hi,
I get this error while running from filter step in the pipeline; (attached my parameter file). Could you help me solve it?
I said no to database search and peptide valdation, as untill thi…
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~Depends on #796~ (Recalibration has advanced enough that this is no longer blocked)
Closes #147
# Plan:
- [x] Present an overview of the plan to the wider group & ask for feedback / brainstorm…
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Hi provim developer:
First of all, thank for developing this awesome tools, it's very useful.
I'a planning to use this software to analyze my MALDI-MSI data sets generated by FT-ICR, which…
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GDoc:
Category: Mass spec sample prep (MALDI spotting, gel digests, etc)
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Please do all assays in a single PR.
Here are the `assay_type`s that might benefit:
```
'scRNA-Seq(10xGenomics)',
'AF',
'bulkATACseq',
'Cell D…
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GDoc:
Category: CSV/Excel File input (for protocols like normalization, cherry picking, DNA assembly, etc),Mass spec sample prep (MALDI spotting, gel digests, etc),othe categ test 3
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The current LC-MS may be modified as described. (Chris)
The current MALDI IMS may be modified as described and renamed IMS. (Chris)
Create 2 new schema : gas chromatography mass spec and capillary e…