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away with `history.bash`
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We'd like to add the option to use phylip's parsimony program dnapars instead of maximum likelihood dnaml, because this allows for non-bifurcating trees where we can better map associate along the tre…
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Perhaps nit-picky, but commonly used methods should be at the top of the list. Currently we have:
```
Maximum parsimony
Maximum likelihood
Neighbour-joining
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When a submitter creates an analysis step, e.g.:
http://treebasedb-dev.nescent.org/treebase-web/user/analysisStepForm.html?analysis\_id=4922
and then clicks the "Edit analysis step details" pencil b…
ghost updated
7 years ago
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The next step is to run some parsimony trees on the Victora data.
This will require parsing the Victora data files and making a file suitable for a phylogenetics program.
In my exploratory steps I use…
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The normalizer at https://github.com/nltk/nltk/blob/develop/nltk/sentiment/vader.py#L107 is not exactly normalizing the inputs to give an output bounded by [-1.0, 1.0] as reported in the docstring. Gi…
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http://bbs.ctex.org/forum.php?mod=redirect&goto=findpost&ptid=152301&pid=541550&fromuid=178857 时发现的。
MWE:
``` tex
\documentclass{article}
% \usepackage{fontspec}
\usepackage{xeCJK}
\begin{document}
…
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Label: Real Issue probably needing John Chodera's attention
Following on from Slack/OpenForcefield/general post from this morning, which is cut and pasted here:
------------- begin paste
One of the k…
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This is important, since the version we are currently using contains a **BUG** that allows for negative branch lengths in trees constructed with the Neighbor Joining algorithm and another bug that inc…
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This will require a fairly major effort; I'm gathering my thoughts for discussion/debate.
A goal, probably a prerequisite for wide release such as on CRAN, is for the GitHub repo to contain a clean s…