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HelloI
I tried to rerun the program under MacOS (Sequoia 15.0).
Environment:
java 21.0.4 2024-07-16 LTS
nextflow 24.10.0
Docker version 27.3.1, build ce12230
On the test data, it stops pr…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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I used the supplied data with this workflow and it could run without error, but in the end, I got only empty result files. Can anybody check it and fix this issue? Thank you!
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issues are:
- [ ] use of compact URI for gene, transcript, exon identifiers
- [ ] use of compact URI for sample identifiers / experimental conditions
- [ ] explicit declaration of `quantitation t…
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Hi,I want to use your software,but I don’t know what is “name” in metabolomics_data,"group" and "class" in batch_information.I want to know the way how can I use this software. Thank you very much.
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https://metabolomics-usi.ucsd.edu/mirror?usi1=mzspec:MSV000078836:T250-3-EA.mzXML:scan:1083660&usi2=mzspec:MSV000084314:MSV000078836.mgf:scan:44259&mz_min=50&mz_max=500
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The following is a draft of what I'd like to send out to forums and anywhere else I can find researchers congregating.
As you can tell, I'm quite concerned about coming off like a slimy startup wh…
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Metabolomics data is commonly analyzed by PLS-DA and OPLS-DA models. This can be implemented in the R ropls package. Would it be possible to include these model types as options in SIMON? I am curious…
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Format name: < mzTab-M >
Short description: < A flexible tab-delimited reporting data standard file format for sharing quantitative mass spectrometry metabolomics/lipodomics results. It contains the …
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It would be nice if we can remove the repository_dependencies.xml (https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/camera_macro/repository_dependencies.xml) files at some…