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runngin ciftify_recon_all in a docker container leads to:
Traceback (most recent call last):
File "/home/code/ciftify/ciftify/bin/ciftify_recon_all", line 1570, in
main()
File "/home/code…
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I noticed that you used the BraTS data set **in preprocess.py** to process the 4 dimensions of the MRI image. I would like to ask that there is only one image.nii and one segmentation.nii in KiTS, and…
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**What**
Multi-dimensional TMAPs (e.g., operations on raw data) are currently second-class citizens for execution modes that are expected to produce outputs. For example, inference of segmentation mo…
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I've been trying to run your fetal brain segmentation algorithm on our recently collected fetal fMRI data using the code on Github.
It seems to run fine on google collab, but the predicted outputs fo…
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Hi,
could you share a list of the dataset sources that build your 23 dataset.
Thank you in advance!
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**Is your feature request related to a problem? Please describe.**
I am looking for a tutorial for superresolution models with MONAI. That is models that can learn the mapping between
(1) low-res…
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Hi, when I run trn_3DUNET.py, I got the error of
> ITK ERROR: ITK only supports orthonormal direction cosines. No orthonormal definition found!
in the line 142 of
> es_label = sitk.GetArray…
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**AIMS**
- Adapt, if needed, the training procedure one the microscopy data is loaded
- Retrain ADS models (SEM, TEM and OM)
**Preliminary questions**
- Deal with multiclass (axon/myelin/backgro…
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**Is your feature request related to a problem? Please describe.**
A type of transforms that I find useful is to extract features from a segmentation mask (e.g. volume, maximum diameter...) . I usual…
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I would appreciate some feedback on my training curves. Looks like over-fitting which I thought the VAE would address. L2 and KL are set to 0.1 for the VAE in the loss function. The 'Dec_GT_Output_lo…