-
Hi!
I have a couple of issues/questions, for which I can't seem to be able to find an answer browsing through everything.
1) I am using plot_ordination to generate an NMDS plot on my data, I wou…
-
Mens jeg så på [dette](https://github.com/realfagstermer/realfagstermer/issues/1330), jeg så litt på termer om multivariat dataanalyse. Det er to som er brukt litt interchangeably på dok:
![image](ht…
-
The `InterclusterDistance` visualizer is our newest cluster visualization, and while it's been implemented completely, there are still a few updates I'd like to make to it:
- [ ] Ensure it works fo…
-
When running tests against the tip of main on an iRODS 4.3.3-ish server I saw the following tests fail when using a mysql 8.4 or mariadb 11.4 server for hosting the iRODS catalog:
`irods.test.genqu…
-
Hey :)
This is an awesome tool.
I am using https://fbmn-statsguide.gnps2.org/
You have a great option to remove the blanks from the dataset as a pre-processing step before running the stats analys…
-
Hi,
This is again probably a simple issue but is there a way to get the row names/numbers from the sample data section of the phyloseq object as a label for data points in ordination plots?
Thi…
-
Dear All,
I am totally new to R programming that I know is very powerful tool for statistical analysis.
I am trying to transfer data from QIIME to R using Phyloseq for analysis. My data is paired-end…
-
Dear friends:
I am getting stuck at a problem while using phyloseq to plot an ordination plot, here are the codes and errors below:
physeq ord = ordinate(physeq, formula=~Treatments, "PCoA", "unifr…
-
There has been a bit of confusion on how to generate multiomics biplots using mmvec.
This mainly boils down to the usage of `sample-metadata-file` and `feature-metadata-file` - this can get confusi…
-
Hi Dr. Gosselin,
I downloaded sticklebacks_Danish.vcf from https://datadryad.org/stash/dataset/doi:10.5061%2Fdryad.kp11q and the strata.stickleback.tsv from https://www.dropbox.com/s/ely3wp4j4tulkrc…