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We need to choose how to prioritize annotations for salmon data. I think that doing this in two batches makes sense.
- Batch 1: High priority examplar data
- specific datasets that we intend to u…
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A little background information about the example we list in RBM documentation website would be helpful.
This is the comment I get from Darri:
`Some slight information about the example case (e.g…
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I recently quantified a set of RNA-seq samples using both Salmon and RSEM to eventually do differential isoform analysis. When the overlap of significant isoforms was rather low -- even though the onl…
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Hi @k3yavi @rob-p
Will there be precomputed SAF gentromes made available as tarballs for select genomes (human, mouse, rat, arabidopsis, soybean, maize) etc
A few months ago, they were availab…
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This is not exactly a bug, but a comment and a question regarding how Salmon uses the positioning data in fastq files. We had a series a RNASeq samples where the majority of the reads were listed at 0…
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When i use the command：./nextflow run nf-core/rnaseq -profile docker --input /home/young/miniconda3/bin/samplesheet.csv --genome GRCh37，it report the error that .
The same error when i use the comman…
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Hi @brianjohnhaas,
I'm getting an error related to salmon. In one of the issue you advice to use --samples_file so I did.
Thi is my specification file
```
Atal SRR5956435 /user/work/tk19812/An…
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**Attendees**:
- R-multiverse team: Will Landau, Charlie Gao, Maelle Salmon, Jeroen Ooms (r-universe)
- Reg R Repo team: Coline Zeballos, Doug Kelkhoff, Wilmar Igl, Xinye Li, Yann Féat, Zhenglei Ga…
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### Primary Contact
debra.palka@noaa.gov
### Secondary Contact
_No response_
### Data Name (This will be the displayed title in Catalog)
Gulf of Maine Atlantic salmon
### Indicator N…
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toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.9.0+galaxy2