-
```
If you set outSAMattributes as All then the sam file generated is incompatible
with Cufflinks. The error is something like no XS tag for a spliced read. But
when one uses outSAMattributes in st…
-
Given a .fasta with a sequence of length 31, containing a ".":
```
>iupac 31 857152f076709b2c6067edcbaaba65c7
.aAbBcCdDgGhHkKmMnNrRsStTvVwWyY
```
running "samtools faidx" produces:
`…
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Hi there!
We are recently very interested in abra2 for fast and accurate reassembly/realignment of InDels.
When using other tools with the realinged bam from abra2, we discovered this following pot…
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Dear @CiaranOMara
I've been working a bit with XAM.jl. Great package, but I've found quite a number of small errors and mistakes I think should be fixed. Making one PR for each would be overwhelmi…
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The TIFF-hul module demands magic number 42
https://github.com/openpreserve/jhove/blob/47f077fcb09d3dd5720aeeb4abf27de5dac48d19/jhove-modules/tiff-hul/src/main/java/edu/harvard/hul/ois/jhove/module…
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Hello,
I was wondering if you were planning to add an option to use BAM files instead of SAM files for the coverage calculation ?
Or is there a way to retrieve the SAM content from STDOUT ?
I'm…
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Per user, the PG tag "isn't delimited right so when parsing the ID field appears as if it contains everything". Could be related to concatenation of commands when creating the tag? Will check into it…
-
### Description:
Unable to set OAuth2 authorizer on API method [x-amazon-apigateway-any-method] for path [$default]
### Steps to reproduce:
Below is template.Yaml file used and when run sam d…
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こんにちは TAG-さん!
I'm requesting a TAG review of FedCM Button Mode API and Use Other Account API. These are extensions to the existing [FedCM API](https://fedidcg.github.io/FedCM/).
The web needs a …
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Importing logbooks could look like:
1. download
2. copy to (assign UUID, verify file integrity)
3. harvest metadata from original archive
4. update dataset
Eventually, I'd like updates to t…