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I am opening this issue as a notification because `TCGAbiolinks` is listed [here](https://cran.r-project.org/web/packages/Seurat/index.html) as a package that relies (depends/imports/suggests) on Seur…
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Dear authors,
for the last two days i was trying to assess and download different transcriptomic TCGA datasets from the TCGAbiolinks R package. However, with queries like the following:
```
rea…
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I'm gathering gene expression data (legacy) from all projects and GDCprepare takes several hours to handle the compressed files.
In my untrained mind, extracting and binding columns of ~10-20K row…
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Any reason that I'm gettin this error? I followed your github installation ( in the readme)
`
Error in value[[3L]](cond) :
GDC server down, try to use this package later
> sessionInfo()
R vers…
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https://mp.weixin.qq.com/s/l2eOdrqgM64ZVPX77XWmdw
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What does this error refers to?
GDCdownload(query_samples)
rcc = GDCprepare(query_samples)
I got this when I ran above command.
please help.
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I am running the "case studies" from this page "https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/casestudy.html"
and I find error information like below:
> TabCoxNe…
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Hello, Thanks to TCGAbiolinks group for your work. But TCGAvisualize_SurvivalCoxNET cannot work well at present.
I tried this code from help documents.
-----------------------------
require(dnet)…
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Dear Collegue,
I wrote the follow code but I get this error from the TCGAanalyze_Preprocessing function:
Error in `$
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Dear people,
based on an issue noticed in a previous post concerning survival analysis, i inspected the outputs of normalization of raw HTSeq counts using TCGAbiolinks and the TCGAanalyze_Normaliz…