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Hello @eugenegardner, so I'm trying to do some QC on the pVCF exome data and I'm looking at the approach you took. I wonder if you have an idea on how much would be the cost of analyzing the pVCF chun…
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Demonstrating GPU cost efficiency and progressing on issues raised in https://github.com/pystatgen/sgkit/issues/390 may both be aided by creating a representative public workflow for UKB GWAS. A sing…
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Whenever there is a snp in data that does not have the same direction of effect as the other snp, then the p-value becomes 1.
![image](https://github.com/gqi/MRMix/assets/111515000/ffa3deb3-2de1-4e21…
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Hi,
I am interested in creating priors with PolyFun using approach 3. I would like to pass estimates of LD from the data I have, stored in .bcor files. Is this possible? The --ld-ukb flag does some…
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# Steps to reproduce
> Run CSP application with valid aap id, app secret and customer Id .
> AuthenticationResult token = await serviceClient.RefreshAccessTokenAsync(
$"{AADIns…
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I am trying to extract from the ubm dataset
all
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So the objective here is to take the GWAS for males and GWAS for females, and create a new one which has the same number of SNPs but a single combined effect for each SNP. In doing so we can also test…
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Hi,
My results have amounts of Inf and NA. Why did it happen like that?
![image](https://user-images.githubusercontent.com/52747757/112232242-85749780-8c38-11eb-96aa-71b4c34179aa.png)
Best rega…
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TODOs related to documentation:
- [x] Separate commands in README into those that produce minimal results and those that are useful on-demand (i.e. monitoring and scaling commands)
- [x] Add separ…
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Hello,
I would like to thank you for such an incredible and well-documented resource, which is way better than the DNAnexus'es own pipelines/instructions. I was wondering if you have figured how to …