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See: https://github.com/bgyori/indra_cogex/actions/runs/4298454058/jobs/7492573390. For some reason compatible versions for some dependencies cannot be resolved resulting in a failed install. @cthoyt …
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DO switched to using "MIM" prefixes instead of "OMIM" prefixes. We need to review how this change will affect Mondo ingest (and Mondo in general).
One aspect that will be affected is the exact lex…
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## Description
Currently:
| Prefix | URI expansion | Synced? |
| ------ | -------------- | -------- |
| ICD9 | http://purl.obolibrary.org/obo/ICD9_ | NO |
| ICD10 | http://purl.obolibrary.org/o…
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Some (or all?) dependencies aren't getting installed by pip.
Example:
The `cpuinfo` module may not get installed by pip, but it's imported in [the `__init__.py`](https://github.com/AnacletoLAB/ens…
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NCBI Gene (Entrez) has a few references I haven't seen before (or don't know what to do with, like TAIR):
```
[ncbigene] unhandled xref prefix: Phytozome …
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the uniprot obo file is actually just swissprot
```
grep -c '^id: uniprot:' ../obo-db-ingest/export/uniprot/2022_02/uniprot.obo
567483
```
which is useful in its own right, but it should be c…
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The SPARQL service (https://bioregistry.io/sparql) will accept a GET request, but not a POST request, both of which are required. particularly important for federated sparql queries.
https://www.w3…
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Please create some dummy PURLs for the WWF ecoregions and export a table with the PURLs and the WWF ecoregion labels. There is moderate urgency. Thank you.
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Two requests related to MGnify
First, new prefix `mgnify.analysis`
Example:
https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270
I believe the pattern should be `MGYA\d+`, I will have …
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Related to #690, we'll have to provide the previous 3 years of usage statistics, therefore we should begin tracking usage of the Bioregistry in a minimally invasive way (like at least country of acces…