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## This issue is for the following packages:
- [X] `venia-concept`
- [ ] `pwa-buildpack`
- [X] `peregrine`
- [ ] `pwa-devdocs`
- [ ] `upward-js`
- [ ] `upward-spec`
## This issue is a:
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gil-- updated
3 years ago
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12 Disease + 12 control samples were integrated and clustered. In each cluster, differential accessibility was performed for disease cells vs control cells. The results are very odd for a two reason…
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Hello,
Thank you very much for developing this tool!
I just wanted to ask, would it be appropriate to run TOBIAS only on differentially expressed peaks between 2 genotypes?
This is because …
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Hi,
I had merged 16 different runs together in a multiome and for the ATAC peaks somewhere along the way it looks like I lost the genome information:
`all_runs@assays[["peaks"]]
ChromatinAssay…
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I am curious about your thoughts on the best ATAC-Seq analysis strategy for differential accessibility analyses among experimental groups. We have data from a few related experiments totaling 8 condit…
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Hi, I have 5 cases and 5 controls, I would like to integrate cases and controls separately, normalize by their library size, and perform DA of peaks. I am not sure how to properly use scATAC-pro workf…
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Meeting note on Feb 26. 2021
1. DNA footprinting pipeline(shared by Shannon): http://www.regulatory-genomics.org/hint/introduction/
2. DNA footprinting paper (shared by Shannon): https://genomebiolo…
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Hi !
I'm trying to install Tobias through condo, but I'm finding problems. How can I solve this?
$ conda install tobias
Collecting package metadata (current_repodata.json): done
Solving envi…
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Hi team,
I've tried your method to predict footprint scores (which I think is the sum of accessibility and footprint depth).
The result is hard to interpret though.
For example, this GATA1 is pre…
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### Steps to reproduce
1. Open a folder containing images and a video file (with large images and video files it appears easier to replicate)
2. Open the preview view of an image or video
3…