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- [x] Check if the KBase model was using the correct genome
- [ ] Check if RAST annotation in KBase is redoing gene calls
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Hello,
I am just using PPanGGOLiN for the first time and am encountering an error:
```
Traceback (most recent call last):
File "/home/matwan/anaconda3/envs/ppanggolin/bin/ppanggolin", line 10,…
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Hi,
I installed checkm2 using the yml file, and downloaded the database without issue.
I get the following unicode encoding error in the `testrun`, but also when I try it on a small data (3 genome…
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### Proposed Term Label
Ontario COVID-19 Genomic Network
### Proposed Associated Field(s)
sequence submitted by
### Definition/Description
The Ontario COVID-19 Genomic Network (OCGN), includes th…
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failed to execute: para_RepeatMasker --out_prefix RepeatModeler_out --lib RM_*/*.classified --cpu 4 --tmp_dir para_RepeatMasker.tmp /home/changchuanjun/gene_structure_annotation_20240224/Fuji_Ral-Fuji…
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Dear author,
Thanks for developing this tool!
I am testing a few regions and found this strange results. This TRF annotated region has a 52bp INS, but it is not shown in the otter local assembly…
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### Description of the bug
ERROR ~ Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)'
Seems to be when creating multiQC file? Perhaps this is due to wanting to …
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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**Describe the bug**
I suspect CRISRPme is occasionally reporting off-targets generated by indels that are False-- i.e. that are not actually generated by the reported indel
As part of an analys…
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While running code "run_cicero", I keep getting "The previous R session was abnormally terminated due to an unexpected crash"
I don't know what to do,I also test the other data, meet the same issue…