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```python
/ouce-home/staff/smit0136/.conda/envs/ed_37/lib/python3.7/site-packages/xarray/core/nanops.py:161: RuntimeWarning: Mean of empty slice
return np.nanmean(a, axis=axis, dtype=dtype)
HDF5-…
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Both [load_hdf5](https://github.com/ptiede/VIDA.jl/blob/a60788fdf92cf67510a5f714c56539406d9691d7/src/io.jl#L148C20-L148C32) and [get_image](https://github.com/ptiede/VIDA.jl/blob/a60788fdf92cf67510a5f…
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### Summary
Allow any package to be placed under `modules:default:lmod:hierarchy`.
### Rationale
Currently, only virtual packages can be used under `modules:default:lmod:hierarchy`. It would be nic…
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We haven't bumped the minimum supported HDF5 version in several years, and we still have a couple of tests that run with HDF5 1.8 (on Windows, due to some quirks of history). Meanwhile, HDF group are …
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```
-- Using find_package(HDF5 ...) ...
-- Found HDF5: hdf5-shared (found version "1.14.0") found components: C
TRIBITS_TPL_FIND_INCLUDE_DIRS_AND_LIBRARIES: HDF5
-- PARSE_REQUIRED_HEADERS='hdf5.h'…
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hi i use this
scTE -i possorted_genome_bam.bam -x /disk5/lyc/index/mouse/scte/mm39.exclusive.idx --hdf5 True -CB CR -p 4 -o scte/
and it showed No such file or directory:"scte/_scTEtmp /o4/scte/.b…
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Hello, I am experiencing problems with saving and loading *.h5 files. If I run the following code:
m_handle = mesh.save("Numerical_Models/Mesh-RIFT-v62.h5")
The result is a h5 file having name '…
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**Describe the bug**
Downloaded https://huggingface.co/google-bert/bert-base-uncased/blob/main/tf_model.h5 to local machine and ran modelscan --show-skipped -p ./models/bert-base-uncased/tf_model.h5 …
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`access-om2 2024.03.1` is built with `hdf5 1.14.3` which contains [a bug](https://github.com/HDFGroup/hdf5/issues/3831) that prevents ACCESS-OM2 from running.
The issue [is fixed](https://github.co…
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While testing h5_extended_fuzzer with libfuzzer, I found a memory leak
The reason for this vulnerability is:
There is a direct leak that occurs when object creation is handled in the HDF5 library…