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## Description
When restarting a simulation that appends to the existing logfile, it would be nice if the header could be left out to make data parsing easier.
## Proposed solution
I'm …
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## Description
## Script
Modify `forces_and_energies.json` to include any value you choose for a "forces" array. Then build and run `pytest`.
## Output
All tests pass.
## Expected o…
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## Description
It appears that I cannot read custom log quantities from a gsd file, because they are not being written to the gsd.
## Script
To run the simulation ...
```python
import hoomd…
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## Description
`Logger.add(instance, quantities=['some_non_default_quantity'])` does not add the quantity as documented:
This is what the documentation states:
> The only_default flag is main…
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## Description
## Script
Came across this while working but it also fails without anything in the snapshot.
```python
import hoomd
import gsd.hoomd
device = hoomd.device.auto_select(…
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## Description
In the second term, it is 2*(1/r)**6 rather than (2/r)**6.
## Script
```python
# Include a minimal script that reproduces the problem
```
## Output
## Expect…
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Hello!
Another question for you all. I noticed from the umbrella integration example with HOOMD, I can take `results = method.run(...)` and use this for getting at the final free energy surface (FES)…
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## Description
- Working with Thomas Gabrielson
## Proposed solution
## Additional context
## Developer
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Feel free to make a more succinct title.
## Description
I've initialized a simulation from a gsd file (via `create_state_from_gsd`) that was created from a 2D simulation in HOOMD v2.
Since the gs…
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## Description
Refactor the HPMC wall updater to the HOOMD v.3.0 API. The template can be found in the `feature/new-object-API` branch's `Clusters` updater in `hoomd/hpmc/update.py`.
## Proposed…