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When using marvel data and the simple no nodelist import
`load("/Users/gabe/Dropbox/IDEANet/Example Data/marvel/marvel.Rdata")`
`ideanet::netwrite(i_elements = edges$Source, j_elements = edges$T…
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What are recommended ways to compare motifs from TFMoDisco and other methods in terms of similarity and significance?
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Hello, thanks for this great tool !!!
I try to redo the [10x multiome pbmc Tutorial](https://scenicplus.readthedocs.io/en/latest/pbmc_multiome_tutorial.html#Motif-enrichment-analysis-using-pycistarge…
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## 🐛 Bug
In the motif_utils.py/sort_by_score function:
```
scores = scores.split(num_rois, dim=0)
ordered_scores = []
for i, (score, num_roi) in enumerate(zip(scores, num_rois)):
…
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Dear developers,
I would like to run snapper on a set of reference contigs (not whole genomes). I have native and wildtype data.
```
single_to_multi_fast5 -i "${nativeFAST5}_single" -s "${nativeF…
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Frequency: Every time
Action:
1. Launch the app
2. Tap on "START" button
3. Go to Motifs tab
4. Select 100 motifs from "friendship" category
5. Now go to "sad" and then "hug" category
6. Check, in "…
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I found [seqkit locate](https://bioinf.shenwei.me/seqkit/usage/#locate) very useful but it was surprisingly slow. Would you think there is any `biobear` approach for that? In general, any seqkit funct…
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Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
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**Describe the bug**
When clustering multivariate timeseries, KShapes returns the same cluster center for each dimension. When I generate 3-dimensional timeseries of 8 catogeries, TimeSeriesKMeans fi…
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Frequency: Every time
Action:
1. Launch the app.
2. Tap on "START"
3. Tap on Motif tab
4. Expand wordmotifs category by clicking on it
5. Select first 3 motifs
6. Click on "X" button and go back to …