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I would like to run QSMxT 6.4.4 on some premade QSM images to do the segmentation and analysis.
When I tried to use the command "qsmxt bids/ qsm/ --do_segmentation --do_analysis --auto_yes", the s…
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Hi,
I was trying to use `mne-bids` to BIDS-format anatomical scans and integrate it with the MEG part of the data set. In the process, I got a bit confused. My idea was to first create this bids d…
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**Let's list all the file formats that could potentially be represented efficiently as "virtual zarr" - i.e. zarr + chunk manifests.**
The important criteria here is that the format must store data i…
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The [4dfp](https://4dfp.readthedocs.io/en/latest/format.html) out of Washington University is still being used. I ran across a need to use it while reproducing some Midnight Scan Club analyses, and a …
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Hi,
I'm planning to use PALM in a scenario in which spatial proximities used in spatial statistics (clustering) are defined by the user. I was wondering if there's room for implementing such a feat…
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@Shotgunosine and I have been working on updating and adding various AFNI interfaces, and just finished talking about how to deal with one of the main issues that we've found in all of them: AFNI defa…
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Dear Alfonso,
I am using conn21a to create a new project by importing data from BIDS dataset. The dataset has successfully been validated with BIDS validator, and it contains "anat" (T1w scan), "fm…
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https://github.com/brainlife/validator-neuro-rois/blob/298168d6edda6a2b73edb52f20056efc1553a38c/validate.py#L51
If I'm interpreting this line correctly, it seems that ROIs can only be validated if …
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Since fmriprep is very useful for large-scale data processing,
I face the problems due to different sequence protocol. During dicom-to-nifti converting, padded slices are generated, but it doesn't re…
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### Summary
Hello, I am using the ``nipype.interfaces.fsl.FLIRT()`` command to register a T2 atlas nifti image to a T2 subject nifti image, and I need the affine matrix output of this transformation …