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When running the Example code 1 (Create a QUEEN class object (blunt-ends), dna = QUEEN(seq="CCGGTATGCGTCGA")) in Colab, I now get the "AttributeError". This error has probably occurred between 20-25.1…
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This may just be because I'm using an ipython notebook, but using the same procedure to align sequencing results to uniprot sequences (amino acid) uses too much memory and crashes the browser when try…
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Interoperability with BioPython may be the easiest way to enable this.
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Interoperability with BioPython may be the easiest way to enable this.
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Reported by @vincentdavis on issue #1
Some images are scaled, e.g. in http://biopython.org/wiki/Phylo or its MediaWiki equivalent https://github.com/peterjc/peterjc.github.io/blob/master/wiki/Phylo.…
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I have using a custom component, based on:
https://fondant.ai/en/latest/components/components/#custom-components
```
dataset = dataset.apply(
component_dir="components/biopython",
arg…
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I have been attempting to run the DEPtH program on a few myco genomes to understand the software and I am encountering an issue with the html output. Regardless of the genome I get the following erro…
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Log: https://travis-ci.org/biopython/biopython/jobs/625300915#L845 & https://github.com/biopython/biopython/pull/2401#issuecomment-565821110
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I just found some old Python code breaking up long strings in a way that really seems like poor style (which black does not address https://github.com/psf/black/issues/1183), and seems like a good fit…
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The docstrings for the PAML run methods seem a little confusing/out-of-date about the return values.
https://github.com/biopython/biopython/blob/biopython-172/Bio/Phylo/PAML/_paml.py#L88
*"Return …