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Biopython was released December 15th, 2009. No major changes were made, so the new package just updates the source and SPKG.txt.
CC: @maxthemouse
Component: **packages: optional**
Keywords: **b…
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I'd like to make some customizations to the BioSQL schema so that I can more efficiently access the data that I require. I'm interested in a handful of genes. I understand SQL, but I'm also very new…
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I can install emojify and run fine through brew on OSX 10.9.5. But though pip installation of pyemojify seems to work, pyemojify can't be imported to python2.7 (system current), 2.6, etc..
Installe…
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I'm working on a BioSQL database for SwissProt entries and it's balking at some of the UnknownPosition values that are being set by the SeqIO parser (I'm using BioPython 1.69). I'm sure wading into t…
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$ mysql -u root -p biosql < biosqldb-mysql.sql
Enter password:
ERROR 1071 (42000) at line 87: Specified key was too long; max key length is 767 bytes
hmkim updated
7 years ago
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Recently I've noticed this kind of error from PyPy3 under TravisCI, e.g.
https://travis-ci.org/biopython/biopython/jobs/87728288
https://travis-ci.org/biopython/biopython/jobs/87731411
https://travis…
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Last time we looked at this, PyPy's reimplementation of NumPy was very incomplete - missing things like linear algebra support - but they have been making steady improvement, see http://buildbot.pypy.…
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Hi,
As mentioned in my comment in issue #820 , I'm not able to run `Tests/test_KDTree.py` or the related class in the `Bio` folder.
Following @peterjc suggestion, I've run the `python setup.py i…
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Until recently we supported Python 2.6, where the ``unittest`` library did not support the ``self.assertIn(search_term, thing_to_search)`` method meaning we used ``self.assertTrue(search_term in thing…
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Do all the pages look OK in terms of the markdown rendering from MediaWiki?
- [x] http://biosql.org/wiki/Annotation_Mapping
- [x] http://biosql.org/wiki/BioJava_BioSQL_ORM
- [x] http://biosql.org/w…