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Imputation using the expectation maximisation algorithm EMCOMP includes the assumption that data is below a certain threshold, which must be used as input. Consider reimplementing an expectation maxim…
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Poster:
- [ ] better structure to 6. Results
- [ ] check if References are not cut out
- [ ] wrap up Tree picture
- [ ] check References if correct
- [ ] check grammar with Word
- [ ] make col…
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## Problem
Match prediction is an intensive process.
It is also deterministic: same input will result in same output.
Thus caching calculations could save on computation.
Input for match prediction:
…
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@hangsuUNC Run HiPhase on whole genome using current parameters with no filtering for all samples:
- [x] Break out a per-sample workflow from the current PhysicalAndStatisticalPhasing workflow. This …
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I have a question whether the pre-trained UniTS training dataset contains the test dataset. If so, then the training process of time series prediction and time series completion is essentially a self-…
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As far as I can tell, there is currently no way to do NMF (or other decomposition methods) with missing data. This could be useful for at least a couple of reasons:
1. Data imputation: Using factor…
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I tried to imputation my genotyepd data with 23andme-impute.
Imputation step may be finished, so output files were generated.
tmp_impute2.chr1.1
tmp_impute2.chr1.2
...
tmp_impu…
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Hi, I met a wrong when I run the mouse data. My input data is in .csv format.
When it runs into this step, occurred some wrongs.
_Starting load data...
Calculating MAGIC...
Running MAGIC on 5…
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As described here: https://github.com/emilelatour/csp-2018/blob/master/mice-work-for-csp-2018.md
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Running MICE imputation on a dataframe with categorical data throws an error:
(DataFrame info is somewhat abridged)
```
In [27]: data.info()
Int64Index
Data columns (total 23 columns):
time …