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Hi Toby!
I've been analysing the results from running the latest version of earlGrey and ran into an error when using bedtools coverage with the final gff made by Earl Grey (found in X_summaryFiles…
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### Description
Some CI jobs currently time out even though there does not seem to be anything fundamentally wrong with them. Affected are, from what I have seen:
- Fast Verilated Earl Grey tests …
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Currently there are combinations of x that don't have that test type set up at all. This is a significant problem for incoming PRs—we are being much more rigorous about enforcing the need for tests …
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After obtaining the result, I would like to remove the unclassified and non-repeat bar. Could you please guide me on how to do that? Additionally, I am wondering which file I should utilize to generat…
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This is a bug report for perl from "Carlos Guevara" ,
generated with the help of perlbug 1.43 running under perl 5.39.1.
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BB…
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**Describe the bug**
String and Object are not mapping in Laravel 10
**To Reproduce**
```
$mapper = app()->get(\JsonMapper\LaravelPackage\JsonMapperInterface::class);
$data = $mapper->mapObject…
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### Description
The links as they appear on docs.opentitan.org are currently broken for the `Hardware` and `Software` links. Looks like these are pointing at paths like https://opentitan.org/hw/index…
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Hi,
Thanks again for the interesting workshop for BGA23! As promised, I am looking into writing a bioconda recipe for this: https://github.com/dirkjanvw/bioconda-recipes/blob/add_earlgrey_v3.0/recipe…
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Hi Toby
I'm trying to use earlGrey to generate a set of libraries for further curation. However, I'm facing an inconvenience.
After the de novo prediction and classification, when earlGrey use TEstr…
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Hello, author, EarlGrey's one command has brought convenience to our genome annotation. I struggled to run RepeatMasker and RepeatModel, and they gave such a result. How can I get a similar table from…