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Hi there,
How do I format the RagTag correct command to receive paired end short reads for validation? Would it be like:
> ragtag.py reference query -R forward_reads.fasta -T sr -R reverse_read…
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Hi,
I am running MaSurCa version 3.2.6 but I got numerous Broken pipe massages which probably lead that it failed.
Here is my config file:
```
# example configuration file
# DATA is specifi…
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hi,
this is not an issue. plz bear with me since i am new to this. in the example to construct, you use the ".vcf.gz" file. currently, i have the ".fna" file, but how or where do i get the correspo…
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After hours, I finally succeed to run SolidBin ! As documentation is ultra light and it seems to have no support on this tool I share my commands.
Note for developpers: I think conda environment sh…
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Dear Masurca team,
I'm trying to assemble a yeast genome (roughly 13MB genome) with Illumina PE reads and everything seems to work fine until the Gap close step:
[jue jul 25 15:45:38 CEST 2019] …
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singularity exec /home/aicampos/miniconda3/envs/Culebront/lib/python3.10/sitepackages/culebrONT/containers/Singularity.culebront_tools.sif circlator all
Traceback (most recent call last):
File "…
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Hi!
I am trying to run PECAT. Unfortunately I have the following error during the assembly step:
2024-04-10 09:58:13 [INFO] Load 2896539 reads from file: PATH/corrected_reads.fasta
2024-04-10 0…
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Hi,
The final assembly length (contig and scaffold) is about 25% shorter than estimated (151Mb vs 199Mb). Could this be due to more than repetitive regions - i.e. coverage below some threshold? This…
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Hi,
when I run the mecat2canu, I get a configuration error :
Don't panic, but a mostly harmless error occurred and canu failed.
canu failed with 'task meryl failed to find a configuration to ru…
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Hi,
Sorry to keep posting issues.
I am getting the below error during the end of the 0-overlaptrim-overlap stage.
I tried recompiling but this has not helped.
I am not sure if this is rel…