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Hi,
I want to have an annotation database of dbNSFP v3_5a for hg19. But, I can only find a version just for hg38 only at
https://bioinformatics.mdanderson.org/Software/VariantTools/repository/an…
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Enter your comments, questions, bugs, or discussion items for Tutorial 2.3 here.
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Hello,
I am new to nipye, I am running a pipeline on fmri auditory dataset but its giving error on nomalization(using spm.Normalize()) .
thank you,
I am attaching the crash file produced -
`…
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hello,
I am working on 16s amplicon sequencing and I wanted to create a SILVA reference database using this tutorial:
[https://constax.readthedocs.io/en/latest/tutorial3.html](url)
so I created a s…
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### Description of the bug
As you mention in your Nextflow pipeline: @https://nf-co.re/sarek/3.0.2/parameters it would be possible to obtain the results of tumor-only somatic variant calling using st…
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I'm using Cromwell v87 on GCP Genomics API. When submitting a job, the error I got is the following:
```
Caused by: java.lang.IllegalStateException: You are currently running with version 2.2.…
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The [spec basically says](https://mapping-commons.github.io/sssom/spec/#json), “the JSON serialisation format is whatever LinkML’s dumper classes produce”. That may be enough for people working in lan…
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### Summary
Setting the minimal inputs for spm.utils.ApplyInverseDeformation() gives the error:
Item 'Image to base inverse on', field 'val': Number of matching files (0) less than required (1).
It…
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The Phenopacket group is planning to use three categories to denote whether a particular field is required, recommended, or optional. Here is an example: https://phenopackets-schema.readthedocs.io/en/…
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Hellos to all,
I have been bugging fellows for a while yet this should not wait any longer,
we discussed this in yesterday's EB hangout:
- we need to specify (as far as feasible) a _preferred_ list o…