it looks like strain isn't always appended to genome_name even though it exists.
sometimes it is genome_id:1458472.3
sometimes it isn't genome_id:1773.214
This makes it difficult to give consistent…
combining info from several emails from multiple people and putting here to track
Harry reported that 3202 genomes are missing genome_status
Becky surmised that it was 3088 from the Strep pneumoniae, …
http://beta.patricbrc.org/portal/portal/patric/Genome?cType=genome&cId=235.14
The genome is listed on the page as "Brucella abortus" only, but when you open up the metadata you can see that it is str…
Am I cursed? I created a group first with Streptococcus pneumoniae D39 and saved to to my workspace. Then I added Streptococcus pyogenes MGAS315 to the same group. When I check in my workspace, all…
Based on the Investigations column on the current elCID system.
- [x] significant organism y/n :
- [x] Organism details
- [x] Antimicrobial susceptibility
- [x] Did we retrieve y/n
- [x] Date retrie…
Hi,
I am trying to get the taxonomy after a blast search and I came across your biopython scripts which they did look very promising.
Ihave tried them with a Mac 10.8.3 with python and biopython ins…