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In https://github.com/biothings/BioThings_Explorer_TRAPI/issues/370, we analyzed the list of 46 APIs currently listed in the `config.js` file, summarized below. One of the things that jumped out at…
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I runned this script:
library(readr)
library(ggpicrust2)
library(tibble)
library(tidyverse)
library(ggprism)
library(patchwork)
# Load necessary data: abundance data and metadata
abundance_f…
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1. NumPy
2. Pandas
3. Scipy
4. matplotlib
5. Patsy
6. Sympy
7. Plotly
8. statsmodels
9. ADiPy
10. matalg27
11. mplstyler
12. Scikit-image
13. Scikit-learn
14. Gnuplot.py
15. NetworkX
1…
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### Prefix
uniprot.mnemonic
### Name
UniProt
### Homepage
https://www.uniprot.org/
### Source Code Repository
_No response_
### Description
The UniProt Knowledgebase (UniProtKB) is a comprehe…
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Advice needed @lpatiny @drc007 @cdsouthan (and anyone else obviously...) I want to make sure we're doing this sheet correctly, meaning a few decisions ought to be made up front. There are a number of …
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Hi,
thanks for providing clusterProfiler, this package works like a charm for enrichment analysis.
However, I experience the same issue, that is already mentioned a while ago here: https://gith…
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GO are planning to obsolete their 'cell death' term, which is the basis of the 'abnormal cell death' phenotype and increased/decreased children:
https://github.com/geneontology/go-ontology/issues/246…
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Two perspectives:
1. ensure we'got all articles in this collection covered
2. together with the other sources, produce a larger collection for https://github.com/amchagas/open-source-toolkit
In d…
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I think it's important to contextualize diffexp results by what these genes _do_, biologically. There are multiple "levels" at which we could support this:
1) Just link out to wikigene / human prote…
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- [ ] [At the Intersection of LLMs and Kernels - Research Roundup](https://charlesfrye.github.io/programming/2023/11/10/llms-systems.html)
# At the Intersection of LLMs and Kernels - Research Roundup…