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Hi,
iam currently working a lot with the KEGG API implemented in Biopython.
I have problems running this simple example:
``` python
from Bio.KEGG.REST import kegg_get, kegg_list
from Bio.KEGG import …
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I first noticed this when reading in a genbank file, writing it out again, and then looking at the diff. All was well, except that the word "circular" from the LOCUS line had disappeared.
This is wh…
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See #809 and https://github.com/biopython/biopython/commit/6348a037dce08e6f64de3fa4b3e2ee99eb1edacc which can give a failure in `test_taxon_left_right_values` as follows:
```
========================…
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Remove `wiki/BioSQL/Windows.md` or rename it to e.g. `wiki/BioSQL_Windows.md` to avoid issue with resolving the URL `wiki/BioSQL`.
See also https://github.com/OBF/OBF.github.io/issues/1
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See also #493 for using a git pre-commit hook.
I would like to have the git pre-commit hook be quite strict, requiring explicit by-passing with `--no-verify` on a case by case basis, while the Travis…
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I've made the following two easyconfigs for local use (which with some cleanup will be submitted upstream):
```
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Autho…
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The [`_delitem_`](https://github.com/ctSkennerton/biopython/blob/master/BioSQL/BioSeqDatabase.py#L633) method in `BioSeqDatabase` assumes that there are foreign keys that will cascade and delete all a…
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Display of SQL "show tables" on https://peterjc.github.io/wiki/BioSQL.html / https://github.com/peterjc/peterjc.github.io/blob/master/wiki/BioSQL.md lacks line breaks, messing up the visual impression…
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See http://lists.open-bio.org/pipermail/biopython-dev/2014-October/020704.html
As noted by Bow and Evan, something appears to have changed on TravisCI with MySQL which is breaking our BioSQL tests, s…
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Hi Developers,
I runn the following command, and got following error when try to access "query_start_all" and "query_strand" property from a HSP object. The Biopython version is 1.64
```
from Bio im…