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Hello,
I'm new to scATAC analysis. I watched your presentation in the recent Illumina event and would like to use signac in our analysis. You mentioned that signac does a better job in calling peaks.…
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**Hello Tim and team,**
**As always thanks for your excellent work. I am in the process of using Signac to analyze some scATAC data and found the ClosestFeature function gave the following error:**
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I propose a common file format for machine learning (ML) models (e.g. pre-trained neural nets for blood count). The idea is to train models using a simple Python script or with AIDeveloper and then lo…
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Related to #110
Currently we have a microarray example of PCA. We should be able to largely copy the microarray example but switch out the dataset and the accompanying wording.
Ideally we will…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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Hello, I'm trying to use this great tool for cell cluster annotation. But when I test it with the pbmc3k dataset of 10x in Seurat guide, the `findmarkergenes` function always throw error. If I let `t…
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Hello,
I used cellranger_workflow on Terra for 10x public dataset (5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor with cell surface proteins (v3 chemistry)). However, both cellr…
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Submitting Author: Luke McGuinness (@mcguinlu)
Repository: https://github.com/mcguinlu/medrxivr
Version submitted: 0.0.2
Editor: @maurolepore
Reviewer 1: @tts
Reviewer 2: @njahn82
Archive: TBD…
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How to use this with minfi package. In older CordBlood package, I do this.
`counts
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@immunomethlomics
I am trying to use this package with minfi. In 450k package, I do this line to estimate the cell type count.
`counts rgset
class: RGChannelSet
dim: 1051815 96
metadata(…