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Hi developers,
I hope this message finds you well. I have a quick question about the UCSCXenaShiny app in R. Is it possible to use human chromosome coordinates, like chr1:68044026-68054909, as a qu…
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Hi @FelixKrueger I deeply appreciate all your helps so far!! (i.e. https://github.com/FelixKrueger/TrimGalore/issues/174, etc.)
Now I have another question for DMR analysis and manhattan plots to s…
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In my instance of running `modkit dmr multi` I get a lot of failed regions. However the output of the command shows contradicting information on the number of regions which failed. See below.
```
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/xxxmichixxx/dinoR
Confirm the following by editin…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/tjhwangxiong/TCGAplot
Confirm the following by ed…
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- [x] Make mouse model using model copy.
- [x] Fix the first Reactome reaction that does not match Rhea R-HSA-70994 Succinate Fumarate (with FAD redox reaction on enzyme) - this should map up to [RH…
ukemi updated
8 months ago
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https://mp.weixin.qq.com/s/nkX-BS_sxlg0JwhBfaCVEw
ixxmu updated
3 months ago
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Hello modkit team,
Using your tool, I have been able to create bedMethyl files for my reads mapped onto a metagenomic assembly, and get high level methylation information using `modkit summary`.
…
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Hi developer,
Sorry to bother you again as I'm new to RNA modification and have one more question. If I were to look for one site which is an m6A/m5C modification site that differs between two groups…
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I am transferring part of a discussion from SourceForge to GitHub.
So, I hope it is OK that I am copying the following content, and I will post responses as an individual (truely myself)
## Copi…