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- Staging is up=to-date with all data
- QC the data for next data release (everything except MUTO-INTL)
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- workflow input: variant call result (sanger or mutect2)
- processed by this workflow, detect whether the results are allowed to be open access. The workflow uses the open access BED file to determin…
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we will need to have download and upload in one single step of the workflow in order to use local storage
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GATK Mutect2 job in PROD with run_id: `wes-3249a28bf75849659f7f64f4d5fbc2d4` failed because Score download error for PROD alignment analysis with
- analysis_id: `d8a0d6d2-fbff-47d9-a0d6-d2fbff57d989…
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Github repo: https://github.com/icgc-argo-workflows/open-access-variant-filtering
Revision: [`0.3.0`](https://github.com/icgc-argo-workflows/open-access-variant-filtering/releases/tag/0.3.0)
Param…
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Expected output: wiki page.
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- We need test data in multiple environments. Typically we download data from one env and upload to another
- This tool is meant to automate this process and make it easier to distribute / resubmit / …
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**Project**|**#onhold jobs**|**Action**|**Status of regenerated jobs**|**Issue**
:-----:|:-----:|:-----:|:-----:|:-----:
ESAD-UK|16|Regenerate the jobs and add to backlog| 800 complete
LAML-KR|2|Re…