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Abusing the example in the Vignette by setting starting values close to each other causes the fitted values to be odd. Specifically, I got a non-stationary fit with transition matrix c(0,0,1,1).
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**In broad terms, what are you trying to do?**
Benchmark OpenFF force fields for protein structure using F@H. We would want to launch a bunch of jobs with just plain ol' proteins in water to g…
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**Submitting author:** @areenberg (Anders Reenberg Andersen)
**Repository:** https://github.com/areenberg/MDPSolver
**Branch with paper.md** (empty if default branch): joss_paper
**Version:** v0.9.7
*…
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How hard to you think it would be to generalize your model to one where you have multiple time series all sharing the same switching factor (like Equation (1) in http://pages.uoregon.edu/jpiger/resea…
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I had this idea to extend the framework a little bit to also allow "us" to make regular (adaptive) MSM simulations. These usually work, by starting somewhere to run a lot of short trajectories. Then d…
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# 🌟 Possible Targets for Vanilla Events
> Here we maintain a list of ideas. Each idea will be a comment starting with light bulb emoji 💡
## PLEASE USE 👍🏻 TO VOTE IDEAS
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I have been trying out your software for feature selection on a neuroimaging dataset. The input data is of dimensions 42 x 300 (eventually I want to work with more predictors, but I am currently testi…
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ANN
3d plot
![image](https://github.com/kurtzace/diary2023/assets/2136211/c1882a9d-1c0…
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I'm trying to fit a MC or HMM with simple constraints on parameters - for example, keeping certain HMM state transitions frozen to 0 while fitting other state transitions, or enforcing that a 1-order …