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Leaving it vague for now. Big updates will happen soon.
joey
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Hello,
this may be a rather naive question, but I don't really understand how singletons are handled by DADA2. The DADA2 manuscript states that singletons can't form their own partitions, still the fi…
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Ahern, P. P.
Faith, J. J.
Gordon, J. I.
2014
Mining the human gut microbiota for effector strains that shape the immune system.
http://dx.doi.org/10.1016/j.immuni.2014.05.012
The gut microbiota codeve…
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Faith, J. J.
Ahern, P. P.
Ridaura, V. K.
Cheng, J.
Gordon, J. I.
2014.
Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice.
http://dx.doi.org/10.11…
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The following are terms under 'lysin' and 'toxin' that I would like to
obsolete because they represent gene products or classes of gene
products and not true molecular functions.
GO:0019844 endoto…
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Summary and proposed model:
http://wiki.wormbase.org/index.php/Molecule#Changes_for_WS251
As proposed following discussion and edits (Sept 4th)
```
?Molecule Name ?Text //WBMoleculeID
Publ…
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Reorganization of Response and Detection Terms
This proposal grows out of the GO Content Meeting
discussion of the Sourceforge item "Pathogenic Terms"
(1013068, now closed), taking into account som…
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- biological uses outside of the group: http://www.ncbi.nlm.nih.gov/sites/myncbi/1ruvipqAmaMkN/collections/48107393/public/
- tools building on khmer concepts: http://www.ncbi.nlm.nih.gov/sites/myncbi…
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In my field of research, it is very common to remove and/or insert custom DNA sequences in microbial genomes. I would like to make the same changes _in silico_ in the FASTA file of the reference genom…