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@jbloom would be good to also include Ne5Gc functional selection data in the phenotype list. I think we want to show the increase in Neu5Gc usage and we have this data in the main flu repo [here](http…
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NOTE: A description of adding a module through Composer is available in Installation. This is an alternative, a manual installation.
Manually downloading Tripal Cultivate Phenotypes Module.
Go t…
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Expected Behavior
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A sweetpotatobase user [reported](https://github.com/Planteome/ibp-sweetpotato-traits/issues/91) that …
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Hello everyone!
I'm using PonyGE2 with pybnf grammars, in which I have a number of constants. I stumbled across "optimize_constants" [here](https://github.com/PonyGE/PonyGE2/wiki/Example-Problems#reg…
LSivo updated
3 years ago
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Some participants have phenotypes that contains no useful information, but are still displayed.
![image.png](https://images.zenhubusercontent.com/5c50c605d33612569216f90c/3b8cdb47-75c3-4405-a735-7e73…
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Hi Team,
Appreciate if someone can advise me on this issue:
**Previous steps:**
1. SNP and COG association with fixed effects model
**Pyseer having issue:** K-mer association with mixed effec…
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## Dataset PID
Propose
`urn:fdc:australiangenomics.org.au:2022:dataset/acute-care`
- [ ] agreed PID
## Data model
Is meant to be 280 trios.
- [ ] agreed data model
- [ ] able to imp…
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Dear rMATS developer,
I performed rMATS analysis with differential test between 2 phenotypes. However, the significant MXE inclusion events are imbalanced between two phenotypes.
To my understandi…
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This is an estimate of the VM rental time necessary to do the GWAS regressions (similar to https://github.com/related-sciences/ukb-gwas-pipeline-nealelab/issues/8).
Here are current figures:
- T…
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Sometimes it's useful to use fractional phenotypes in a case-control GWAS, like in one formulation of [GWAS-by-proxy](https://www.nature.com/articles/ng.3766) where 1 = case, 0 = control, and 0.5 = fa…