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Commit used: [44ed1e9](https://github.com/QSMxT/QSMxT/commit/44ed1e9b27244f406a85c1b799db6f3a96ac9c29)
Command: `./run_2_qsm.py ../data/qsmxt-test-battery-bids-reduced/bids ../data/battery_twopass_m…
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running: python3 /opt/QSMxT/run_2_qsm.py /neurodesktop-storage/01_bids /neurodesktop-storage/02_qsm_output --n_procs 2 --qsm_iterations 2 --masking phase-based
RuntimeError: Command:
phase_weigh…
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QSMxT fails on multi-echo data with the following errors for romeo_unwrapping:
```
Cmdline:
/opt/QSMxT/scripts/romeo_unwrapping.jl --no-rescale --mag /neurodesktop-storage/02_qsm_output/workflow…
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### Discussed in https://github.com/QSMxT/QSMxT/discussions/71
Originally posted by **rosenph** September 14, 2022
Pleased to say that the 1-echo swi produced good QSM images. However, when I …
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Although it appears that there is an argument in when opening the script, it does not seem to work when executing it.
Is this still a WIP or am i doing something wrong?
Thanks!
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python3 /opt/QSMxT/run_1_dicomConvert.py 00_dicom 01_bids
Converting all DICOMs to nifti...
dcm2niix -z n -o 01_bids/sub-sd/ses-1/extra_data 00_dicom/sub-sd/ses-1/27_aspire_qmetric_aspire_bipolar_qs…
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**Use case:** Users should be able to run QSMxT against NIfTI data and have assistance to convert NIfTIs directly to BIDS, rather than only supporting DICOM to BIDS.
**Implementation idea:** Write …
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Some of the recent complications that were added/proposed to QSM were due to the fact that parallel testing will perform multiple repetitions, so what seems to be a unique execution from outside is in…
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if not args.n_procs:
available_ram_gb = psutil.virtual_memory().available / 1e9
args.n_procs = min(int(available_ram_gb / 6), n_cpus)
This currently fails with:
usage: tgv_…