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Dear all,
The proposal has been made to obsolete GO:0005844 polysome and GO:0042788 polysomal ribosome
see https://github.com/geneontology/go-ontology/issues/24651
Experimental annotations th…
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We have 2 terms for translational proof-reading (maintenance of translational fidelity)
GO:1990145 maintenance of translational fidelity
GO:0006450 regulation of translational fidelity
The…
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I checked out the repos:
- https://github.com/holochain/elemental-chat
- https://github.com/holochain/elemental-chat-ui
both on `develop` branches. Followed instructions to get up and running …
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hi there,
I am working on a viral genome, where the annotations (based on ribosome profiling) fairly often include >1 CDS per exon. Using `makeTxDbFromGFF` means that some of these CDSs get droppe…
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Hi,
I've got a little issue with `ngl.js`.
Coarse-grainied **DNA** chains (with only `P` and/or `C3'` atoms) work fine, but coarse-grained **RNA** chains (with only `P` and/or `C4'` atoms) are n…
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## Problem
I've noticed that the `gen(choices=[...])` functionality sometimes performs poorly, even for simple tasks. This is due to a flawed normalised logprobs calculation. The calculation biases o…
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### Description of feature
I'm noticing a lot of multi-mapping reads and those unmapped as 'too short'. Some of this is just down to the short read lengths I guess, but we should try to add some ST…
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Finding expected missing small genes example, nce1
(this should work for most small, reasonably conserved proteins even if we don't have a clue about the location)
Pombe. SPAC12G12.17 /nce1
…
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Although Poisson-Boltzmann is not our priority, we have to start thinking how this implementation should be. Let's use this issue to collect some ideas.
There is a widely used tool to solve the Poi…
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`runParca.py --debug-parca` raises `KeyError: 'FNR-4FE-4S-CPLX__FNR-4FE-4S-CPLX__active'`.
This might depend on which transcription factor condition it randomly selects.
It's also possible that …