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The 10x Fixed RNA Profiling kit has some benefits with respect to the standard kit. For example, cells can be stored before library prep, there is a gene targeting mechanism based on specific targete…
rob-p updated
2 months ago
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- [ ] #64
- [ ] Determine how many megabits of data that is
- [ ] Get Starlink average upload speed and convert required megabits of data to Starlink uptime hours
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k = 21 ~= genus
k = 31 ~= species
k = 51 ~= strain
If we do best RNA-seq sample reference matching at k = 31, check if decreasing salmon k-mer size (if it's parameterized) increases mapping rate…
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- Roasted tomato, pesto, balsamic glaze
- Burrata/ricotta
- Smoked salmon
- Goats cheese, fig, pomegranate
![image](https://github.com/jcallaghan/The-Cookbook/assets/7449908/a69c87ca-2e56-417b-…
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Hello
We are currently trying to use Salmon quant mode with BAM files that were generated from another lab's work. We have continued to get the error below and are unsure what the problem is. Our or…
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Is this a user error or a programming error?
FreeBSD 12.0-RELEASE FreeBSD 12.0-RELEASE r341666 GENERIC amd64
8G memory, 2T disc.
Salmon installed as Linux binary.
The command I issued was
…
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My current version of salmon is 0.14.1 and I need to upgrade to version 1.1.0, I'v tried the command
"conda update salmon" but the version remains 0.14.1.
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
in Salmon bulk mode, while using the following commands to create an index:
A. Ingredients preparation:
grep "^>…
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Hi,
I'm coming back to salmon after a "long" time not using it. I'm a little bit confused with an error message from the last version (0.14.1) when trying to create an index.
The message complains a…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
I wanted to quantify the expression of 3′ UTR isoforms using [QAPA](https://github…