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Under the latest matplotlib release (2.1.0) when I run plot-vcfstats, while it is executing the generated plot.py code I get an error like this
```
AttributeError: This method only works with the Sc…
ghost updated
7 years ago
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Related to #142
Hi,
I am trying to use freebayes-parallel which requires vcffirstheader using a conda installed freebayes and vcflib.
Unfortunately the conda install does not dot contain vcf…
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Hi,
I get the following error when I try to run `plot-vcfstats`:
```
Plotting graphs: python plot.py
Traceback (most recent call last):
File "plot.py", line 240, in
for i in range(n): c…
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running **bcftools stats -c both --fasta-ref $REF $VCF > $VCF.stats** fails although the fasta reference is the same used for mapping and calling the vcf.
looks like a IUPAC bug to me!
Is there a wa…
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FYI I got a dependency error after the latest update.
```
gcc -rdynamic -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o v…
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Building bcftools that has been configured with `--with-htslib=/Users/dave/local/htslib/htslib-1.6` fails to build plugins, `gcc` seems to be unable to find the symbols linked from htslib. The bcftool…
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Hi,
I'm getting the following error running plot-vcfstats:
Plotting graphs: python plot.py
Traceback (most recent call last):
File "plot.py", line 219, in
for i in range(n): col[i] = c…
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I keep getting an error when attempting to plot using plot-vcfstats:
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after cloning bcftools and running make, I get the following error with filter:
echo '#define BCFTOOLS_VERSION "1.4-20-g52e9bb2"' > version.h
gcc -g -Wall -Wc++-compat -O2 -I. -I../htslib -DPLUGIN…
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I have been using bcftools stats, but I’m uncertain about what several fields in the output mean. The documentation is good for what the command line options do, but I cannot findbreakdown of what the…