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I want to find out the differential expressed retrotransposons among two groups of samples. So I firstly ran SQuIRE pipeline on each sample. However, I found the rows in the squire_count/*_TEcounts.tx…
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### Jenkins and plugins versions report
Environment
```text
Jenkins: 2.462.3
OS: Linux - 6.1.109-118.189.amzn2023.x86_64
Java: 17.0.12 - Amazon.com Inc. (OpenJDK 64-Bit Server VM)
---
TestCo…
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I maintain a handful of Jenkinsfiles that use classes as a way to maintain structure. All such Jenkinsfiles are scripted pipelines and _not_ using the declarative API. These classes need to be declare…
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### Description
Short description:
The SonarQube Azure Dev Ops Azure Pipeline Action fails to omit temporary project files (tmp_proj) from code analysis.
Longer Description:
I'm developing…
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A potential research collaborator is evaluating data platforms for running analysis pipelines on their upcoming very large dataset. They're interested in estimating the cost of running an existing pip…
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Use pytest [record_property](https://docs.pytest.org/en/7.1.x/reference/reference.html#record-property) fixture to capture test metadata in XML report.
The properties we want to track are:
```
fronten…
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### pycaret version checks
- [X] I have checked that this issue has not already been reported [here](https://github.com/pycaret/pycaret/issues).
- [X] I have confirmed this bug exists on the [latest…
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C++ compiler static analysis is disabled during pre-check-in CI tests.
This means that pull requests can be completed but then fail the nightly verification builds because static analysis is enable…
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The website needs a data analysis pipeline for at least the following questions. Please feel free to add your own tasks.
- [ ] data analysis on event data
- [ ] identify participants who need …
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Hi creators,
I am new to the WGBS analysis, and I was looking for the pipeline , tried to analysis the example data which you have provided in your repository. I was running …