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It would be nice to export the matrix with the row and column labels and dendrograms into one PNG. And maybe a colour legend too!
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Warning message on my R console:
Warning in heatmap.2(-log10(heatmap.pathway.pvalue), col = (c(intpalette(c("#FFFFD5FF", :
Discrepancy: Rowv is FALSE, while dendrogram is `both'. Omitting row dend…
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I'm following your [tutorial](https://cran.r-project.org/web/packages/dendextend/vignettes/dendextend.html) and am running into an error when I try to reproduce the 95% confidence interval of `cor_bak…
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Running Traitar (version 1.1.2) with packaged sample data generated heat map files, as shown in
https://github.com/haruosuz/mgsa/blob/master/traitar/analysis/2017-06-30/phenotype_prediction/heatmap_c…
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Hello,
Is it possible to add labels to the dendrogram `single_linkage_tree_.plot` produces? The labels would come from the distance matrix used for clustering.
Thanks
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Hi, I am using the code provided in the tutorial and cannot to generate both heatmaps using the following code
```
heatmap.3(t(as.matrix(CNA.test[,4:ncol(CNA.test)])),dendrogram="r", distfun = fun…
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when i run this code:
```r
library(plotly)
set.seed(3)
N
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To draw the corresponding hierarchical tree (dendrogram), the program should record the hierarchical information to the file. I think this feature is not so important for the C++ version that deals wi…
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If you have more than one Clustergrammer instance, the text of the dendrogram sliders only shows on the first one.
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Hi,
Thanks for this interesting tool!
I have seurat object sc ,where I use 'FindClusteringTree' to generate hclust tree and use it as dend (by getting dend = sc@graphs$ClusteringTree)
However, whe…