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Hello,
I am trying to run the program on relatively large bam files of ~20gb each and my job always terminates with the error :"main" java.lang.OutOfMemoryError: GC overhead limit exceeded
As me…
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Hello,
I would like to understand the concepts and functions for scATAC-seq integration vs merging in signac a bit better. My data is very low-dimensional, same cell type, couple of treatments, run…
mliiv updated
4 years ago
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It should be possible to add another parameter to the differential accessibility script specifying the number of cores in order to parallelize `DESeq2`:
http://bioconductor.org/packages/devel/bioc/vi…
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Following on from #3537, I have the following suggested improvements for the documentation for differential rotation:
- [ ] Move examples at the end of `docs/code_ref/coordinates/rotatedsunframe.rs…
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It's a bit weird to me that some of my BIRD output predictions, based on the pre-trained models posted online, return highly similar tracks. Is there a reason for this? The correlation matrix between …
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Hi @timoast ,
Thanks for developping the great tool for ATAC data analysis.
I have a little biological problem about ATAC data analysis showing below:
The ATAC data was generated b…
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Dear all,
I've installed yakut via pip3 on ubuntu focal. Despite all environmental variables are set correctly in my .bashrc and `yakut compile` runs without error, I am not able to monitor the UAV…
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Is it the responsibility of a native mobile app developer (iOS or Android) to address any potential shortcomings in the way the built-in Screen reader announces roles, states, names, values, etc. for …
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Hi Tim,
I found lots of differential peak, the number about two or three thousand, which Base on the Standard workflow of integrated data in Signac. nevertheless, The less differential peak, jus…
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Hi Tim,
People would want to analyze the aggregated scATAC-seq data for their actual samples by Signac. 10xCellrangerATAC offers "aggr" function, and it normalizes the data by subsampling fragments f…