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Hi, I downloaded the Charades dataset and tried to train the dataset with the command:
`python tools/run_net.py --cfg configs/Charades/SLOWFAST_16x8_R50_multigrid.yaml DATA.PATH_TO_DATA_DIR ../Ch…
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While discussing #931, a point was raised that the eval_points actually take up a lot of memory, and we only keep them around just in case the user happens to access `sim.data[ens].eval_points`.
Inst…
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Hi all,
I've tested progen2 on an antibody Fv for which we've also calculated Facebook's ESM log_likelihood stability values, and we see very little correlation between the two. I've tested it both…
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IMP currently takes as input files in a variety of formats, but doesn't care where those files originate. This becomes a problem when we come to publish a modeling study and deposit the files (e.g. at…
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**Is your feature request related to a problem? Please describe.**
The `TICA` and `VAMP` decomposition classes both provide similar interfaces for `.fit_from_timeseries(data)`. However, the `TICA` cl…
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Goal: Characterize ensemble use cases in which data does not simply flow in consistent parallel lanes through generalized (higher-dimensional) operations in a well-defined and deterministic sequence.
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[1_traj_prepair_mstis.zip](https://github.com/openpathsampling/openpathsampling/files/9158803/1_traj_prepair_mstis.zip)
When I run ops with the trajectory file I generated, an error occurs at equilib…
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Hello,
I have been attempting to perform an emcee run on an external high-performance cluster using MPI, but my run encounters a problem anytime emcee samples a set of parameters which are non-phys…
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Hi,
I am trying to sample an interface using TIS simulation. I did the same using Oneway shooting Strategy of OPS and it works fine (example attached).
When I use Twoway shooting (example attache…
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During the development of a model, the faster one can iterate, the better. That means getting your training time down to a manageable level, albeit at the cost of some accuracy. With large training s…
parrt updated
2 years ago