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The Jupyter notebook (`VolkerH/Lattice_Lightsheet_Deskew_Deconv/01_Lattice_Light_Sheet_Deconvolution.ipynb`) produces the error when processing the following cell:
```
from lls_dd.transform_helper…
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Running a stack at 5 volumes/s, 12 planes, on a 600x300 px roi:
1) Max exposure time seems to be a bit lower compared to micromanager standart acquisition (not much, 11 instead of 13), mostrly out of…
vigji updated
4 years ago
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Hey guys,
I read the preprint and readme and the pipeline looks really promising. We have some nice lightsheet whole brain vasculature scans and would love to use this on them.
**Problem:** I'm…
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Might be good for lost users!
vigji updated
4 years ago
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vilim updated
4 years ago
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Duration sent via ZMQ to any microscope acquisition machine (e.g. 2P or lightsheet) is only updated at experiment __init__. When parameters that affect experiment duration are changed in the GUI this …
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The new 1 button starting procedure seems to be producing stacks at random planes during the z scanning, which can be a bit annoying for every volumetric analysis
vigji updated
4 years ago
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**Describe the bug**
I`ve successfully made a registration between my background channel and atlas, but when I ran cellfinder, there is always error, which no atlas existing.
**To Reproduce**
20…
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First, sorry for all the issues I posted recently O.o, overall I really think StarDist is a really neat architecture! The results I am getting after training are really great !
Right now though, th…
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The code
```python
def receive_save_parameters(self):
try:
self.save_parameters = self.saving_parameter_queue.get(timeout=0.001)
except Empty:
pass
…
vigji updated
4 years ago