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Hello, I've been using this package and have managed to make most of the plots using my own data with the exception of the highlighting when zoom into a specific chromosome. It seems that ggmanZoom do…
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We had a request from Andrew Morris to see if its feasible to display the credible set of variants for a particular association peak.
This feature request would involve two parts
- [x] A data sou…
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I am trying to figure out a way to pass data to a LocusZoom plot as a string, rather than giving it a url to fetch the data. Essentially, I would just like to pass the file contents manually, so I am…
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Hello:
Is there any way to use the custom GWAS/eQTL data in locuszoom.js ? And how to add it as the datasource (data are txt file and without api support)? Thanks.
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How to reproduce:
1. Go to http://locuszoom.org/locuszoomjs.php
2. Add a dataset (I used DIAGRAMv3)
3. Add bed track (I used ENCODE / chromHMM / Chromatin State Segmentation by HMM from ENCODE/B…
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In June 2016 a rare major release for [d3](https://github.com/d3/d3) dropped: version 4.x. Just about every corner of the library was touched in some way.
There may be useful new features and/or a pe…
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One of the things that's made getting started with LocusZoom so nice is that it comes with the sample data in `/locuszoom/staticdata`.
The `ld_...`, `genes_...`, `recomb_...`, and `constraint_...`…
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Trying to get to know LocusZoom (which is awesome) by playing with `index.html`, I ran into an error.
I wanted only to plot variants p values against their positions. So I shortened dataSources:
…
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# The Problem
Presently LocusZoom does not support creating a data source that maps to a local file. This is a likely use case for the plugin on a longer time scale.
It's unclear exactly how to appr…
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As .svg for example