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This is rather an *idea for new package* that depends on CobraPy.
I have written a small package to convert relative abundance of macromolecules obtained from different sets of OMIC data into stoi…
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Does anyone has succeed installing memote using python 2.7 versions?
I've tried it on Linux and MacOS and for both memote installation required a python 3 version.
If it is the case, it should b…
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Naming convention from the Supplement of Thiele & Palson's A protocol for generating a high-quality genome-scale metabolic reconstruction. 2010
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I ran across this while getting mminte running on cobra 0.6. With cobra 0.5.11, when two models are added with the "+=" operator, the objective is updated too because of the way reaction objective coe…
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I feel that the blue banner (because it stays as one proceeds through other pages) should have exactly the same options as the 3 boxes on the entry page and not something different:
Search or Explore…
vvons updated
8 years ago
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# Description of the issue
According to the attached publication it should be some strain of Chlamydomonas, see "Metabolic network reconstruction of Chlamydomonas offers insight into light-driven alg…
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These are also valid pseudoreactions.
Is there any real distinction between sink and demand reactions? Can we just convert to using one nomenclature? I definitely prefer `DM_` because it is analogous…