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I am currently trying to set up your project with a standard installation of OMOP synpuf_cdm, however getting some errors on startup of the webapp:
`2017-06-07 10:27:28.816 [localhost-startStop-1] …
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We are currently working on a retrospective oncology research project with several hospitals in Europe. In an initial phase, all the information filled in eCRFs will be saved within each hospital usin…
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In the checks defined in `inst/csv/OMOP_CDMv5.4_Field_Level.csv` for v5.4, the values of `standardConceptFieldName` for the fields ADMITTED_FROM_SOURCE_VALUE & DISCHARGED_TO_SOURCE_VALUE in tables VIS…
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## Overview
@matentzn We went over some of this this morning, regarding [SSSOM::FHIR_ConceptMap](https://docs.google.com/spreadsheets/d/1J19foBAYO8PCHwOfksaIGjNu-q5ILUKFh2HpOCgYle0/edit#gid=913661924…
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I recently delved into my data and found that there are many non-standard codes that do not have mappings to standard codes. I identified these codes in my dataset and attached said codes (including t…
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### Brief Story
Define and document the mapping of source data with the OMOP Common Data Model (CDM) standards.
### Content
- [x] Person table
- [x] Location table
- [x] Visit_occurrence table
- [x] …
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The IDSR Immediate Case-based Reporting Form used in the African Region does not actually capture they type of vaccine a person received:
This is consequential when it comes to COVID-19 because…
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I am attempting to run `CiCalibration::execute` function by following the instructions at
https://github.com/OHDSI/StudyProtocols/tree/master/CiCalibration
I have installed the dependencies _R_ pa…
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from dbignite.omop.data_model import *
from pyspark.sql import functions as F
BUNDLE_PATH="s3://hls-eng-data-public/data/synthea/fhir/fhir/"
cdm_database='dbignite_demo'
fhir_model=FhirBundle…
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We need to list potential vocabulary candidates for radiology-CDM from RSNA-LOINC playbook and RadLex.
We need to figure out where to store and how to organize these candidate codes.