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Tried to re-run the 10K JG workflow with CC on, the workflow failed almost immediately with multiple errors like
```
[ERROR] [04/18/2017 21:11:44.685] [cromwell-system-akka.dispatchers.service-dispa…
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When testing/adapting production WDLs for public use, I often run into the problem that some of the input files are in private buckets. Because there are many input files, it's tedious to check all of…
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Many files types such as VCFs, CRAMS, BED, and evidence data files have companion index files that are sometimes required for fast retrieval over specific genomic intervals.
### Overview:
Some WDL…
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I tried to ask this on the broad forums but got an error."You need the Garden.Community.Manage permission to do that.", "Class": "Gdn_UserException"
I have been using a
backend.default = SGE
…
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Hi, I'm the primary author of [wdldoc](https://github.com/stjudecloud/wdldoc), which is built using the miniwdl Python bindings (and hasn't seen any serious activity in a few years). I recently notice…
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Dear WDL team!
I was hoping to source the community opinion on file bundles, or CWL's secondary files. This issue was spawned from: https://github.com/broadinstitute/cromwell/issues/2269 and also w…
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Now that we've reconfigured and refactored the phasing pipeline to improve SV performance on 10Mbp, we probably need to make additional changes to improve scalability for whole chromosome/genome runs.…
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# Introduction
The essence of a presigned URL is that it gives you privileged access to data (via HTTP verbs, usually `GET`) for a finite amount of time. Some metadata can be obtained via the `HEA…
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### Feature Request
It is troublesome and error prone to manually update the workflow version.
### Solution
Use a GitHub Action to automatically update the version (including the git tag) whe…
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Dear Team lilab-bcb/cumulus,
I wanted to bring to your attention that several of the WDLs protocols you offer, such as Cellbender/remove_background, are no longer functioning properly. Specifically…