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Hello, when I was running the example of 10X_brain_5k in the step of `runChromVAR()`, an error occurred:
> x.sp@mmat = runChromVAR(
+ obj=x.sp,
+ input.mat="pmat",
+ genome=BSgenome.Mmusculu…
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Hi, @MagpiePKU . Thanks for developing EpiTrace. I had the warning "longer object length is not a multiple of shorter object length" when I was running EpiTraceAge_Convergence function, and the functi…
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Hi,
Thank you for developing SCENIC+. I am excited to use it.
When I want to use compute_qc_stats(), I get below traceback.
```
AttributeError Traceback (most recent…
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Dear Tim,
I noticed that when I generated a new peak/barcode matrix with an expanded peak set using Signac, I got significantly lower nCounts_ATAC values compared to the original one I had from Cel…
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Hello,
**Attach your log file**
This step doesn't generate a log file.
**Describe the bug**
I tried to subset a ArchR project with the code below:
proj2=subsetArchRProject(
ArchRProj = p…
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I noticed that when I used the subsetArchRProject function, there was a problem about `file.exists`. The following is the detailed related content:
**Describe the bug/Browse code information**
`…
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### Description
```
Building wheels for collected packages: archr
Building editable for archr (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building editable for archr …
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Hi, I now have the data (10x multiome) for the basic analysis done with Signac, and I want to use it to analyze the specific gene regulatory network. Is there any way to analyze it directly in Signac…
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I read the issue threads #323 & #447 because I've been working a lot with the LSI components of my datasets lately. I think I found the source of the confusion that lead to those posts.
When scaleD…
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when I load the saved project and then use the addMotifAnnotations function, it shows this error :
Error in eval(parse(text = genome)): object 'BSgenome.Mmusculus.UCSC.mm10' not found
Traceback:…