-
- Send email to Rene based on Rajas EBI discussion
- Create tickets from the email
-
Hi,
I am quite puzzled about how to appropriately set the number of different types of mutations when simulating a human cancer genome.
Could you provide me with some guidance on this matter?
…
-
https://data.tst.oncomx.org/allbiomarkers/biomarker/A0399
Urinary bladder cancer panel lists specimen type and disease name as Lung Cancer, please confirm if this is correct.
![image](https://us…
-
Hello,
I would like to use Survirus to detect integration sites in human cancer cells from RNA-seq data.
I'am currently testing the tool on the sample L526401A for which viral integration site hav…
-
Thank you for providing such a great tool.
In figure 3 of the article, you compared the correlation between CD45 RNA expression and IF before and after denoising. I would like to know how you proc…
-
Cancer on first biopsy: 38 Black | 50 White
CIN1 on first biopsy to Cancer on subsequent biopsy: 5 Black | 22 White
CIN1 on first biopsy to CIN 3 on subsequent biopsy: 22 Black | 50 White
CIN2 on …
-
I ran cohort diagnostics on ipci for the cancer polypharmacy data but the inclusion rule statistics are not in the csv output and so are not showing up in the shiny app.
Here is my code:
https://…
-
From the [Usage page](https://ibm.github.io/LNN/usage.html) I have abstracted the following code
```
from lnn import Predicates
from lnn import Variables
from lnn import Implies, Equivalent
fro…
-
This issue has been reported by Belinda Seto.
The 23 repositories are primarily focused on cancer. NCI is about to launch the NCI commons will initially be seeded with 4 of its major data repositorie…
-
Thank you for your great work!
Here is my code:
python -u /public/home/DPYY_tonghy/SequencingCancerFinder-master/infer.py \
--ckp=model_epoch92.pkl \
--matrix=epi.h5ad \
--out=/public/home/DPYY_t…