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It is mentioned in the paper that chemical bonds of drugs are used. How to deal with single elements, that is, drugs without chemical bonds, when constructing 'line_graph_edge_index'?
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https://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=CODH-PWY
```
id: GO:0019415
…
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### Description of the issue:
As we know, SMILES provides a standardized way to encode the 2D structure of chemical compounds like metabolites in a simple text format. This allows for easier storage,…
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I compiled PFAA with the latest commit and it crashed on startup.
```
[Client thread/ERROR] [FML]: Caught exception from PFAAChemica
java.lang.ExceptionInInitializerError
at org.pfaa.chemica.mode…
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https://github.com/orgs/StructuralGenomicsConsortium/teams/cnp4-nsp13 Today's monthly SARS-CoV-2 Helicase FBDD progress meeting will be taking place on Zoom. See the link below to join. The video reco…
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New contact for these data: NWFSC - Seattle
Reached out to Miraglia who passed the buck to James (Jim) Fall who referred me to NOAA Northwest fisheries science center for data:
James 3/6/13:
"Hello. R…
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From https://wiki.openphacts.org/index.php/SureChEMBL
> Compounds are assigned SureChEMBL identifiers as used in the SureChEMBL interface and download files. Please note these identifiers have no rel…
stain updated
8 years ago
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http://doi.org/10.18632/oncotarget.14073
> Recent advances in deep learning and specifically in generative adversarial networks have demonstrated surprising results in generating new images and vid…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…