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As an informatics developer, I would like to better understand the optical physiology sine dewarping python module, so that it will be easier to maintain (easier to bugfix and/or refactor).
Validatio…
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**Describe the bug**
I found some inconsistence about the image dimension When I processed a dataset whose ophyexperiment id is 652094901.the bug is as follows.
when I use the function `dataset.get_…
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I already performed some tests and it works good in most cases. It's a great tool.
Is it be possible to deactivate the binarization step or recover the original images after dewarping? I would pref…
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I I have downloaded the data you provided, but in the dataset.py In, label is. Npz format, but I didn't find this format in the data you provided. Can you tell me how to apply the downloaded data to t…
ARnnn updated
3 years ago
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Hi @ksharindam .
Maybe use grid:  , for "Local Un-tilt"?
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This post is more of a feature request, or maybe a little known command line option already exists that I am not aware of that can accomplish the following scenario
Scenario 1:
Input PNG/JPG/TIF a…
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A critical component of the Scientifica ophys processing pipeline is the step to dewarp the acquired images.
More background is available at http://confluence.corp.alleninstitute.org/display/IT/Brain+…
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I see the need to publish the applied binarization algorithm in a pseudo-mathematical, algorithmic form.
The fact is that it is this algorithm that determines the restrictions on the further class…
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@matchings @wbwakeman
some things that have come up for Pika related to the survey of 184 motion corrected videos.
**Tasks to finish considering adoption:**
- [x] make high temporal resolution vide…
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After the work from #45 was deployed, we have 11 failures in
OPHYS_NWAY_CELL_MATCHING_REMAP_SPECIMENS_QUEUE
(232 out of 243 containers succeeded)
Review and catalog if it is a new problem or not.