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Some infectious disease projects are interested in host-pathogen interactions, so it would be helpful to output the unaligned reads from the RNA-seq analyses to then do microbiome style analyses.
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Yep, out of my depth here.
I am annotating a few pathogen-host interaction papers to test some data types they may need to annotate in Canto.
As part of this I'm making some (tentative) GO annotation…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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We would like to establish a phenotype extension option for
"disease_causing_ability"
This will be an option on all pathogen host interactions initially. Gradually @CuzickA will refine when the…
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GO:0051809 passive evasion of immune response of other organism involved in symbiotic interaction
Definition
Any process in which an organism avoids the immune response of a second organis…
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We should add PHI-BAse and FlyBAse as users here:
https://curation.pombase.org/
Is there a demo version of the multi-organism version we could host too?
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Hello,
The innate immune response will always be triggered in the host, and never in the symbiont - right ? (not that the symbiont cannot have an innate immune system, but it would be triggered by…
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Quoring sensing is defined:
The process in which single-celled organisms monitor their population density by detecting the concentration of small, diffusible signal molecules produced by the cells …
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Hello,
Trying to illustrate why I think we should not systematically make the host/symbiont triad:
PARENT CLASS: GO:0044112 growth in other organism involved in symbiotic interaction
…
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From June:
Dear OBO-Discuss
We at PHI-base http://www.phi-base.org/ are just starting to create a Pathogen Host Interaction Phenotype Ontology and would like to request a new OBO namespace.
T…