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Submitting Author: Jonny Tran (@JonnyTran)
All current maintainers: @JonnyTran
Package Name: openomics
One-Line Description of Package: Library for integration of multi-omics, annotation, and int…
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Hello,
I am using mixOmics package to perform a multi-omics data integration analysis (block.plsda) and have the following error message related to vctrs package. I report the error here as written i…
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I noticed in the dittodimplot information that the object can be a dataframe. Could you give an example on how to do this?
Love using dittoSeq for transcriptomic data but I'm working with other multi…
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Hello
I'm trying to use the latest release of cellxgene_VIP (v.1.1.1) with my data which had been working with v.1.0.1.
When I select to regions of cells to do differential analysis I click on DEG…
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Hello,
I am going through the first tutorial - 10x multiomics and my jupyter notebook stopped as it could not locate the blacklist bed file for the example datasets (specifically - hg38-blacklist.v…
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> Yes, so this does not handle alternative experiments. Our function that we are using will only convert the main experiment. Looking back on [AlexsLemonade/scpcaTools#115](https://github.com/AlexsLe…
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https://mp.weixin.qq.com/s/2LSp-z_igcGZql6AyaumMw
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Hello,
I am new to bioinformatics and in R and from wet lab background. I am analyzing three single cell multiomics (RNA + ATAC) datasets from 10x genomics. When I merge the three datasets, the frag…
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EDIT: see [below for update](https://github.com/biothings/biothings_explorer/issues/774#issuecomment-1918425848), actually migrating to v3 https://api-v3.monarchinitiative.org/v3/docs#/
We are usin…
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Hi!
`KG2.8.4pre` is ready to be canonicalized and rolled out.
**THE BRANCH FOR THIS ROLLOUT IS: `KG2.8.4c`**
**THE ARAX-DATABASES.RTX.AI DIRECTORY FOR THIS ROLLOUT IS: `/home/rtxconfig/KG2.8.4`**…